Tag Archives: Coronavirus COVID 19

Coronavirus – Contact tracing efforts in Solano County back in February

[Editor: the link in the first paragraph to “the patient in her 40s” is a fascinating account by 10 UC Davis physicians, covering Solano County’s first-in-the-nation community transmitted case of COVID-19.  The narrative covers everything from initial intake to the patient’s stable condition and discharge, along with x-rays and treatment timeline.  – R.S.]

Coronavirus detectives: Here’s how counties try to track everyone exposed

CalMatters, by Rachel Becker, April 23, 2020
California needs thousands of contact tracers. But counties and cities are overwhelmed and understaffed. “Woefully inadequate,” said one public health director.

By the time public health officer Bela Matyas learned that the novel coronavirus was spreading in Solano County, the patient in her 40s was already on a ventilator.

Back in February, the woman was the first in the nation known to be infected without traveling or being around someone who was sick. But she was too ill to answer questions about where she’d been and whom she had talked to, worked with and touched.

Dozens of public health investigators from local, state and federal agencies fanned out like detectives, questioning the family members who had visited her and the hospitals that had orchestrated her care — even staking out the store where she worked. Their mission: to piece together a list of people who could have been exposed to the virus.

In the end, the list totaled more than 300 people spanning six California counties, Matyas estimated. Four — including three healthcare workers — tested positive, each prompting their own investigation.

This process, called contact tracing, is a critical element in containing the spread of the novel coronavirus. But the ability of California’s 61 county and city public health departments varies greatly as they struggle to keep pace with rising numbers of patients.

“What we had to do was clear from the beginning,” Matyas said. “But actually being able to do it was very hard.”

Some local health departments, like Madera County’s, have managed to trace the contacts of every person who tests positive for the coronavirus. Others, like the city of Long Beach and Placer County, are so overburdened that they are only trying to trace contacts that could put vulnerable people at risk, such as healthcare workers or people in nursing homes.

To handle the pandemic, the nation will need 30 contact tracers for every 100,000 Americans, according to the National Association of County and City Health Officials. But no California city or county has anywhere near that many. Under that formula, for example, Long Beach would need 140 investigators, seven to nine times more than it has now.

North of Sacramento, Placer County, with a population of almost 400,000, would need 120 tracers.

“It certainly illustrates the point that 18 — which is our expanded capacity, which is more than our baseline of six — is woefully inadequate,” said Aimee Sisson, Placer County’s public health director.

Contact tracing will become even more important as the state starts reopening parts of its economy. The concern is that more human interaction could cause flare-ups, especially since people can spread the virus before feeling ill and limited testing leaves people unaware they’re infectious.

“We need to make sure that there is capacity in every county to do adequate contact tracing. That’s part of containing the disease,” said Kat DeBurgh, executive director of the Health Officers Association of California. “Are we ready today? No. When will we be ready? I don’t know.”

Gov. Gavin Newsom addressed the concern about inadequate contact tracing on Wednesday, announcing plans to train 10,000 people to help local health departments. “The good news is we believe we have the capacity to build an army of tracers,” Newsom said, although he did not say when they’d be ready to deploy.


Jeffrey Martin, a professor of epidemiology and biostatistics at the University of California, San Francisco, said that fighting an epidemic is like fighting a wildfire: The state can’t afford to mess up containment.

“[It’s] important to track all of those people down to extinguish all the embers in that brushfire,” Martin said. “If we don’t do it right, and if the brush fires are not extinguished, you’d have to be a magical, wishful thinker, to think that there would not be a raging wildfire.”

Some counties keep up, others can’t

The San Joaquin Valley county of Madera typically has two to three people keeping tabs on tuberculosis and sexually transmitted infections in its population of roughly 157,000 people.

Then, the coronavirus hit — and the initial cluster encompassed about 200 patients and potential contacts, said Madera County public health director Sara BosseThirty-six people have tested positive.

Still, by teaming with the sheriff’s department and probation investigators, the county has managed to keep up contact tracing, isolation and quarantine for everyone potentially exposed.

Madera is unusual in that investigators, typically in plain clothes, visit patients and their contacts in person — sort of. They drop off packets of information as well as a letter excusing work absences to employers. Then they get back into their cars, and answer questions face-to-face through the window, over the phone.

“Then they can explain to them what’s going on,” Bosse said. “We understand that people are experiencing a lot of anxiety and it’s difficult for people to hear this news that they might have been exposed.”

For now, the spread of the virus seems to be slowing. “We’re really hopeful that it’s at least in part due to the active contact tracing that we’ve implemented,” Bosse said.

The spread of the novel coronavirus in Madera County appears to be slowing, according to county data.

In Riverside County, cases are coming in faster than the county’s 30-plus person team can investigate them, according to Barbara Cole, branch chief of disease control for the county’s public health department. The county has 3,084 confirmed cases.

It can take multiple phone calls to build enough trust to reconstruct someone’s string of contacts, Cole said.

“It’s about trying to establish a rapport, stressing how we’re going to protect their confidentiality,” she said. “The majority of people, they’re concerned about their friends and their family.”

In the Northern California county of Solano, Matyas quickly realized that tracing and quarantining all contacts would be impossible for every case. To date, 186 people have tested positive in the county.

Instead, the county focuses on tracking the risk to vulnerable populations, including people who are older, have underlying medical conditions, or live without shelter.

Solano County’s communicable disease team, which has shrunk to its original staff of six, first interviews anyone who tests positive about where they work and who they came in contact with. That in some cases is a long list: people who visit their homes, coworkers who sit close or share food.

Then a member of the team calls all of the contacts. The idea is to identify and isolate people who are feeling ill or whose jobs put them at risk of infecting others in nursing homes, hospitals, or homeless shelters.

“We no longer pretend that we can do any kind of active quarantine,” Matyas said. “There’s no bandwidth to check on them to see if they’re doing it.”

Workers are conducting patient interviews and case followup at the Long Beach health department’s operations center. Photo by epidemiologist Nora Barin.

Long Beach and Sacramento and Placer counties also are only tracing the virus’s spread through vulnerable populations.

“Instead of asking every place you went to, every person you came into contact with, we say, ‘Have you been in contact with vulnerable populations?’” said Sisson in Placer County. “We just have too many cases for that full interview.” In the county, which is home to the first person to die of the novel coronavirus in California133 people have tested positive.

In Long Beach, every case initially was tracked. But then people kept getting sick, and most of the deaths are in long-term care facilities

As people sheltered in place, contact tracing didn’t have to be as extensive. “Now we’re to the point where we have more than 400 cases, and we’re really focusing on our healthcare worker cases, and our cases in our long-term care facilities,” said Emily Holman, communicable disease controller for the city’s health department.

Tracing contacts of people in long-term care facilities is different than in the community at large. Instead of focusing on reconstructing a web of contacts, the aim is to rapidly identify and separate infected and potentially exposed people from healthy people. Speed is key, so if someone’s symptomatic, they’re treated as a case even with no test results.

“Every minute in those facilities can be crucial and could prevent an exposure,” Holman said.

Staffing up

Former CDC Director Tom Frieden called for an army of more than 300,000 contact tracers in an interview with STAT. And current CDC head Robert Redfield announced plans to hire 650 more public health personnel, including to help with contact tracing, the Washington Post reported.

Local health departments have been bolstering their workforces on their own. San Francisco plans to recruit and train as many as 150 people to conduct contact tracing, including librarians, city attorney staff and medical students.

The Bay Area’s Alameda County also has ramped up from just seven staff investigating cases of communicable disease to 60 people assigned to the novel coronavirus — including 18 who follow up with contacts. As the epidemic progresses, “we anticipate deploying as many as 300 staff for contact tracing,” said Nicholas Moss, acting director of Alameda County’s Public Health Department.

Sacramento County is working to expand its six-person team to 30 by recruiting from other departments and training medical students to work with people who are homeless.

“We’re hoping that based on the modeling that’s occurring, that we will be ready — and actually, we’re hoping that there won’t be another wave,” said Public Health Officer Olivia Kasirye.

Is there an app for that?

Some counties are looking to technological help. San Francisco, for instance, is training its contact tracers to use a platform that Grant Colfax, director of public health, called “an integral part of our efforts going forward.”

The platform, developed by a software company called Dimagi, is not an app that people can download to their phones. Instead, it’s a web portal that public health workers can use to keep tabs on people with infections, list their contacts and keep in touch.

Apple and Google also have proposed tracking people’s proximities using Bluetooth. Newsom has said the state is vetting various technologies.

But Alameda County’s Moss is cautious about protecting the privacy of residents. 

“We want to make sure that any technological tool we employ where people’s health information is going to be input, that there are adequate safeguards for privacy,” Moss said. Plus, the app has to be easy to use, and it has to cough back up the data needed to keep tabs on the virus’s spread.

Eric Sergienko, Mariposa County’s health officer, worries that if each local health department ends up using different software, it might be hard to trace contacts that cross county lines.

That’s where Sergienko hopes the state steps in and standardizes the platform California’s counties use. “What can the state do for us? Just by finding the best one,” he said.

State Health and Human Services Secretary Mark Ghaly said that California will need 10,000 more contact tracers as it modifies its stay at home order. Between 2,000 and 3,000 people could test positive per day. And each of them could have ten contacts, he said.

California might not have needed to push quite so hard to ramp up during the crisis if it had funded enough public health workers to begin with. “We’ve been seeking increased funding for years,” said Kat DeBurgh, executive director of the Health Officers Association of California.

More trained health workers could be important in fending off the next pandemic.

“By having these trained contact tracing public health workers, we can actually prevent infections, prevent the severe disease from happening in the first place,” said Lee Riley, a professor of epidemiology and infectious diseases at the University of California, Berkeley’s School of Public Health.

“But right now, everything that we’ve been doing is just reactive to what’s already happened.”

Coronavirus lies, nonsense and misinformation… set straight

Misinformation goes Viral

TheStartup, by Jason Shepherd, Apr 13, 2020 (updated 4/22)

Self Isolation has led many to delve into crackpot theories that go from man-made viruses to spread of infections via 5G cell phone towers. Now, those that are rational are already asking the right questions and seeking legit sources of information…but more and more people are losing it. Feel free to use the information in this story to educate your friends. This pandemic is stressful enough without people confabulating nonsense!

I’ve found that people “listen” more if you have credentials, so while I’m not a fan of throwing letters at people…here are mine. I have a PhD in Cellular and Molecular Medicine from the Johns Hopkins School of Medicine. I did my postdoctoral work at MIT and am now an Associate Professor of Neurobiology at the University of Utah .

I run a research lab that works on the molecular mechanisms of memory and brain plasticity (www.shepherdlab.org). More recently, we made a surprising discovery between memory and..viruses. If interested, see here

and here.

All of that just means that I spent a long time being trained to problem solve, analyze data and I know a fair amount about biology.

All of the links below are public and I encourage you to read them. In no particular order here are some common themes of misinformation:

1. No, YOU (bar the first Chinese patients in Wuhan) did not have COVID19 prior to Jan 2020.

The first documented cases in China were in late November/early Dec 2019. Scientists can “track” the origins of viruses by sequencing their genetic material. Over time, viruses accumulate mutations that make them identifiable. Think of family trees and tracing genetic mutations, this is very similar. See this article for a good explanation:

UPDATE: If you are interested in the analysis mentioned in the NYTs article, here’s a great website that traces the sequencing data: https://nextstrain.org/ncov/global and for the US: https://nextstrain.org/narratives/ncov/sit-rep/2020-04-17?f_country=USA

2. The virus is NOT man made.

Scientists can compare the sequence of the new virus with other known viruses and determine how similar it is. The most similar virus is a coronavirus found in bats and the differences are due to mutations that occur through natural evolution, rather than an artificial sequence that was suddenly added.There are literally billions of viruses, all with different hosts and life-cycles…some mutations allow those viruses to jump into new hosts. The clearest picture so far is that SARS-COV-2 originated from bats and maybe an intermediate host. The most likely scenario is that this jump from an intermediate host happened in the wild animal market in Wuhan (https://www.cell.com/cell/fulltext/S0092-8674(20)30328-7).

In addition, the interaction between the virus spike protein (that make the “crown” of proteins that stick out from the balloon-like membrane) and the human receptor ACE2, which allows the virus to get into human cells, is complicated and something that would be extremely hard to engineer (https://www.nature.com/articles/s41591-020-0820-9). Indeed, the ACE2 interaction had already been identified with a bat coronavirus in 2010, giving credence for a natural origin (https://www.nature.com/articles/nature12711).

4/17 UPDATE: There are insinuations that a lab in China working on bat coronaviruses may have let the virus “escape”. There’s a lot of finger pointing by various US agencies, but I’ve yet to see any scientific analysis that makes this claim credible…so far. There’s also precedent for coronaviruses jumping hosts and into humans, both SARS and MERS for example. Indeed, scientists had publicly warned that this would be one of the most probable causes for an international virus outbreak. Here’s a good write up on the evidence for all of this:

3. NUMBERS and MODELS are not deliberately misleading people.

Guys, this is a new virus and nothing was known about it prior to Dec 2019. The good news is that it is similar to the previously known coronaviruses SARS and MERS. But infectivity and mortality were completely unknown. Scientists use models to refine their ideas but no one model is correct. You’re seeing discrepancy in models/projections precisely because science isn’t magic…the more we know about the virus and how it works, infects people etc the better the model.

Conversely, epidemiologists can study past and current data to INFER what will happen in the future. All models point to social distancing as a means to stop spread and indeed this is working

So no, there’s no conspiracy by scientists to “control the numbers”. While governments might be producing their own propaganda on how they are dealing with the pandemic, there are legit sources of data that are impartial to politics (eg. https://coronavirus.jhu.edu/ and https://www.ft.com/coronavirus-latest).

4. COVID is not the flu! By now, I hope most are convinced.

But, here’s a representation of the worst case scenario happening in NYC right now (with updated numbers 4/16) and it’s scary ! From

The weekly COVID numbers are compiled from the daily Johns Hopkins numbers pulled from their GITHUB repository. The CDC flu, pneumonia and total death numbers are downloaded from the FluView site here: https://gis.cdc.gov/grasp/fluview/mortality.html.

The CDC flu, pneumonia and total death numbers are downloaded from the FluView site here: https://gis.cdc.gov/grasp/fluview/mortality.html

UPDATE: 4/22. Here’s a video that shows the daily deaths of COVID and the main causes of the death in the US. You get an intuitive grasp on how bad this pandemic is!

5. Bill Gates.

When he announced that he was going to help develop a COVID vaccine, people went nuts. People started asserting that: Gates wants to kill people with the vaccine; Gates patented the new virus; Gates knew about the virus before the Chinese. WTF people, let’s try and use critical thinking skills?! The richest man on earth gave up running a company to devote all his time to a foundation that is dedicated to public health (https://www.gatesfoundation.org/). Go check out their website. No, Gates won’t profit off of a new vaccine, no he doesn’t want to kill off people with it and NO he isn’t orchestrating some sort of grand plan to take over the world like a Bond villain!

6. The claim — virus is spread by 5G cell phone towers.

OMFG! First, 5G is just as safe as 4G. And 4G is just as safe as your home microwave. Second, a virus cannot be spread by cell phone towers because viruses, you know, only infect living things. So please don’t go and destroy cell phone towers.

UPDATE: Since I’m now also getting a lot of questions about 5G itself, I thought I would say something here. Cell phones use radio wave frequencies to transmit. If you remember your HS physics, electromagnetic waves include visible light, radio and X-rays. Radio waves carry less energy and are long-forms, X-rays much more energy and shorter. The latter is called ionizing radiation and are dangerous as we all know. The milli- and microwaves are safe, except for the generation of heat (which is how microwaves heat up food).

So, 5G has a little more energy than 4G but has orders of magnitude less energy/harm than visible light. You should be WAY more worried about UV rays from the sun. For more info, see here:

7. Health care workers and almost all the scientists I know are working to save lives.

There are accusations that scientists manufactured the virus or that we are covering up for big pharma companies. We are not paid off by the government or big pharma! We really just want to help people. Health workers are literally putting their lives on the line under challenging conditions.

Scientists are racing to find treatments and produce a vaccine. Science works by a process and that takes time. You will see announcements that X drug works but often this need repeating and validation. This isn’t because scientists don’t know what they’re doing! For a nice explanation of how this works, see here:

I understand that people are afraid and desperate for good news, but we should all wait for confirmation from the medical community before rushing to conclusions.

8. Herd immunity.

I’m loving that anti-vaxxers are now claiming that herd immunity is better than having a vaccine. Well, crap…did you know that vaccines actually WORK by accelerating herd immunity? Yes, that’s right..herd immunity is when enough people have recovered from the virus to then be immune and cannot reinfect other people or get sick. Now, there’s a lot of uncertainty of how well or how long people recovering from COVID will be immune, but ultimately the only way to control the pandemic is through herd immunity. BUT, natural herd immunity will need at least 70% of the total population to be immune. If this is done by just letting the virus spread unchecked, we are talking about millions of people dying world-wide over the next few years. Vaccines accelerate herd immunity without killing people by inducing antibody production that can kill the virus, the same kind of antibody response people achieve after recovering from an infection .

We are all in this together! The internet is a double-edged sword, endless access to information…but often it’s hard to determine what information to pay attention to. My advice,

Keep Calm and listen to Experts!

Letter to Congress: Stop Coronavirus Handout to Big Oil

Center for Biological Diversity, April 23, 2020

Give Pandemic Relief to People, Not Polluters

The Center For Biological Diversity and about 300 other groups sent a letter to Congress on Monday demanding that federal relief money aimed at relieving the effects of the COVID-19 crisis be directed to people directly affected by it, not fossil fuel corporations.

The fossil fuel industry, said the letter, should be excluded from receiving loans in the next COVID-19 aid package. New bills should ensure that affected workers in that industry are provided with assistance and labor protections for weathering a job transition.

“It’s a moral outrage for fossil fuel executives to try to cash in while workers and communities suffer through a pandemic,” said the Center’s Ben Goloff, a climate campaigner. “Congress needs to protect people, not a handful of profiteering polluters.”

Tell Congress to direct taxpayer-funded COVID-19 aid only to those who need it.

Headlines in search of stories… coronavirus in Benicia & Solano County

By Roger Straw, April 23, 2020

Those of you who are familiar with the Benicia Independent know what it is and what it isn’t.

I’m a one-person journalist.  For over 13 years here on the BenIndy, I have published news and opinion from a Benicia California perspective.

I am NOT an investigative reporter.  Mostly I repost interesting and important stories written by others.  I am an environmental advocate and an old time liberal on issues of race and gender, peace, justice, poverty and more.  I tend to focus on a single issue for weeks or months – or even years – at a time.  I’ve reported at length on hazardous oil trains, gun violence and the need for gun control legislation, local and national electoral politics, and so on.

Recently I’ve  taken on the COVID-19 pandemic here in Solano County.  And that’s where I want to take you today.

Every day now since the second week of March, I’ve posted Solano County’s numbers of confirmed coronavirus cases and deaths.  Most days I spend hours combing through local, regional and national news about the virus and posting it here on the BenIndy.

Your response has been amazing.  At the height of our successful effort to stop our local refinery from importing dirty and dangerous crude oil by rail, almost 1,800 of you paid a visit to my pages one day – a record for the BenIndy that lasted for about 5 years.  Since I started reporting on COVID-19, more than 3,000 of you have checked my pages on 9 occasions, and on April 1 you set a new all-time record of 8,105 views.  A huge and unexpected leap!

Thank you!

Now what does all that have to do with the title of this piece, “Headlines in search of stories… coronavirus in Benicia and Solano County”?

Here’s the deal: every morning I get up and flip back and forth through about 7 local and national news channels on the tv.  I spend about an hour like that while I drink too much coffee and lean my sore back on an electric heating pad.  And I take notes – ideas about important stories that I really SHOULD cover on the Benicia Independent.

Now if I were an editor in chief with staff, I’d assign reporters to make phone calls and conduct interviews and come back with stories, important stories that really should be written.

Alas, that’s not me, and that’s not the BenIndy…

So, with all that lengthy introduction, here is my list of headlines in search of stories.  Please.  Someone out there – please get on the phone or otherwise track down the information that the public needs to know, for instance…

  • There’s a NATIONAL crisis in nursing homes – how many are sick in Solano County’s congregant facilities?  Where ARE our nursing homes and retirement facilities?  (None here in Benicia – so where do Benicians go when we get old and in need of care?  And how are those facilities doing???)
  • Testing in Solano County long term care facilities – numbers, results?
  • Solano has recorded 3 coronavirus deaths, 2 among those aged over 65.  Did they die in a hospital?  And before that, were they living at home or in a long term care facility?
  • Solano County is testing fewer than 50 per day – why?!!!
  • Today’s news: Contra Costa, Napa, Sonoma and San Francisco are expanding testing – why not expanded drive-through testing in multiple cities in Solano?
  • Unemployment numbers in Solano and Benicia?  Local numbers on those unemployed? And local numbers of unemployed with no health insurance?
  • Bolinas and SF Mission District are testing EVERYONE – why not here in Benicia?  (Yes I know Bolinas is tiny and wealthy, but can’t we think big?  Who are a few philanthropists and billionaires with ties to Benicia who could fund such a project?)
  • Reopening moves are beginning to appear in Bay Area counties.  Who is planning the reopening of Solano County, and what are the plans?  And will they be open to public comment?
  • Coronavirus and guns – with schools closed, March was the first month with NO SCHOOL SHOOTINGS in the US since 2002.  Rather a bittersweet statistic – do we celebrate, or weep?  (This despite an uptick in gun purchases.  And what’s that all about?!)
  • Surely there is a dire fiscal impact of the coronavirus lockdown on Benicia and Solano governmental cash flow and operations.  Details needed, and possible solutions.

Etc., etc…  You get the idea.  But who can take it on?  The huge problem with all this is the horrific times our local news media, journalists and reporters were suffering even before the pandemic.  Too many cutbacks, too few local journalists, too few local newspapers, and now too many absences, too much loss of revenue during these historic pandemic times.  (So yes, there’s another headline in search of a story.)

Roger Straw
The Benicia Independent